baker: Bayesian Analysis Kit for Etiology Research

An R Package for Fitting Bayesian Nested Partially Latent Class Models

Build Status

Maintainer: Zhenke Wu, zhenkewu@umich.edu

References: If you are using baker for population and individual estimation from case-control data, please cite the following paper:

  Citation Paper Link
partially Latent Class Models (pLCM) Wu, Z., Deloria-Knoll, M., Hammitt, L. L., Zeger, S. L. and the Pneumonia Etiology Research for Child Health Core Team (2016), Partially latent class models for case–control studies of childhood pneumonia aetiology. J. R. Stat. Soc. C, 65: 97–114. doi:10.1111/rssc.12101 Link
nested pLCM Wu, Z., Deloria-Knoll, M., Zeger, S.L.; Nested partially latent class models for dependent binary data; estimating disease etiology. Biostatistics 2017; 18 (2): 200-213. doi: 10.1093/biostatistics/kxw037 Link


Example charts

Click on a chart for the corresponding interactive version.

iplotScanone example iplotCorr example
iplotMScanone example iplotMap example
iplotCurves example iheatmap example
iboxplot example iplotRF example
ipleiotropy example scat2scat example
iplotScantwo example

Sources on github: